Complex glycan structure

No image
N-Linked / Complex (avg mass : 2162.0415)

3D structure from GLYCAM

Cross-references

GlyTouCan : G76136FD

GlyGen : G76136FD

ChEBI : 154239


Composition

Hex:3 HexNAc:6 dHex:3


IUPAC

Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:a-lgal-HEX-1:5|6:d
10b:b-dgal-HEX-1:5
11s:n-acetyl
12b:a-dman-HEX-1:5
13b:b-dglc-HEX-1:5
14s:n-acetyl
15b:a-lgal-HEX-1:5|6:d
16b:b-dgal-HEX-1:5
17s:n-acetyl
18b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:7o(3+1)9d
9:7o(4+1)10d
10:10d(2+1)11n
11:5o(6+1)12d
12:12o(2+1)13d
13:13d(2+1)14n
14:13o(3+1)15d
15:13o(4+1)16d
16:16d(2+1)17n
17:1o(6+1)18d

GWS

freeEnd--?b1D-GlcNAc,p(--4b1D-GlcNAc,p--4b1Man(--3a1Man--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-GalNAc,p)--6a1Man--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-GalNAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd

Glycam

DGalpNAcb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpNAcb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH

SMILES

C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)NC(=O)C)O[C@H]8[C@H]([C@@H]([C@@H]([C@@H](O8)C)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O

InCHI key

HZZJRHVHNOJDSX-MDJXUROVSA-N

InCHI

InChI=1S/C84H140N6O58/c1-19-43(104)55(116)60(121)79(128-19)126-18-36-65(53(114)37(73(125)131-36)85-22(4)98)140-76-40(88-25(7)101)54(115)64(32(14-95)136-76)141-82-63(124)70(146-84-72(59(120)49(110)31(13-94)135-84)148-78-42(90-27(9)103)69(145-81-62(123)57(118)45(106)21(3)130-81)67(34(16-97)138-78)143-75-39(87-24(6)100)52(113)47(108)29(11-92)133-75)50(111)35(139-82)17-127-83-71(58(119)48(109)30(12-93)134-83)147-77-41(89-26(8)102)68(144-80-61(122)56(117)44(105)20(2)129-80)66(33(15-96)137-77)142-74-38(86-23(5)99)51(112)46(107)28(10-91)132-74/h19-21,28-84,91-97,104-125H,10-18H2,1-9H3,(H,85,98)(H,86,99)(H,87,100)(H,88,101)(H,89,102)(H,90,103)/t19-,20-,21-,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58-,59-,60-,61-,62-,63-,64+,65+,66+,67+,68+,69+,70-,71-,72-,73+,74-,75-,76-,77-,78-,79+,80-,81-,82-,83-,84+/m0/s1