GlyConnect

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taxonomy (1) protein (1) source (1) structure (1) composition (1) disease (0) reference (2) site (1) peptide (0)

Disease

Reference

A 13C-n.m.r. study of the 6-deoxy-D-altropyranose-containing pentasaccharide chain present in a polysialoglycoprotein isolated from the eggs of Salvelinus leucomaenis pluvius (Japanese common char; Iwana). (1988 - Iwasaki M, Inoue S) / Status : Reviewed
Identification and determination of absolute and anomeric configurations of the 6-deoxyaltrose residue found in polysialoglycoprotein of Salvelinus leucomaenis pluvius eggs. The first demonstration of the presence of a 6-deoxyhexose other that fucose in glycoprotein. (1987 - Iwasaki M, Inoue S, Inoue Y) / Status : Reviewed

Reported glycosite

Polysialoglycoprotein (psgp) / Salvelinus leucomaenis pluvius
- Undefined site

Mass spectrometry observed peptide

- O-Linked / Core 1 (avg mass : 894.8331)

3D structure from GLYCAM

Cross-references

GlyTouCan : G18861SZ

GlyGen : -

ChEBI : -

Composition

Hex:2 HexNAc:2 dHex:1

IUPAC

dAlt(b1-3)GalNAc(b1-3)Gal(b1-4)Gal(b1-3)GalNAc

GlycoCT

RES
1b:a-dgal-HEX-1:5
2s:n-acetyl
3b:b-dgal-HEX-1:5
4b:b-dgal-HEX-1:5
5b:b-dgal-HEX-1:5
6s:n-acetyl
7b:b-lalt-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3o(4+1)4d
4:4o(3+1)5d
5:5d(2+1)6n
6:5o(3+1)7d

GWS

freeEnd--?a1D-GalNAc,p--3b1D-Gal,p--4b1D-Gal,p--3b1D-GalNAc,p--3b1L-b-L-6-deoxy-Altp,p$MONO,Und,0,0,freeEnd

Structure

Details for this Core 1 / O-Linked glycan structure

Taxonomy

Protein

Source

Reported structure

Composition

Disease

Reference

Reported glycosite

Mass spectrometry observed peptide

Source

Reference

Reported glycosite

3D structure from GLYCAM

Cross-references

Composition

IUPAC

GlycoCT

GWS