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  • Structure

Structure

Details for this Complex / N-Linked glycan structure

SNFG, Text, Oxford
Taxonomy (3) Protein (7) Source (3) Structure (1) Composition (1) Disease (1) Site (7) Peptide (0)

    Taxonomy

  • Torpedo californica (Pacific electric ray)
  • Homo sapiens (Human)
  • Gallus gallus (Chicken)

    Protein

  • Ovalbumin / Gallus gallus    P01012
  • Saposin c / Homo sapiens    P07602
  • Ovotransferrin / Gallus gallus    P02789
  • Acetylcholine receptor protein / Torpedo californica    P02718    P02712    P02714    P02710
  • Uncharacterized protein from Egg Cell / Gallus gallus
  • Ovomucoid / Gallus gallus    P01005
  • Riboflavin-binding protein / Gallus gallus    P02752

    Source

  • Spleen (UBERON_0002106)  
  • Electric Organ (UBERON_0006869)  
  • Egg Cell  

    Reported structure

  • N-Linked / Complex / GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc

    Composition

  • Hex:3 HexNAc:6 (avg mass : 1723.6125 )

    Disease

  • Gaucher Disease (DOID:1926)

    Reported glycosite

  • Ovalbumin / Gallus gallus :
    •        Undefined site
  • Ovomucoid / Gallus gallus :
    •        Undefined site
  • Ovotransferrin / Gallus gallus :
    •        Undefined site
  • Uncharacterized protein from Egg Cell / Gallus gallus :
    •        Undefined site
  • Acetylcholine receptor protein / Torpedo californica :
    •        Undefined site
  • Saposin c / Homo sapiens :
    •        Undefined site
  • Riboflavin-binding protein / Gallus gallus :
    •        Undefined site

    Mass spectrometry validated peptide

  • No image
    • N-Linked / Complex (avg mass : 1723.6125 )
    • Site (7)

        Reported glycosite

      • Ovalbumin / Gallus gallus :
        •        Undefined site
      • Ovomucoid / Gallus gallus :
        •        Undefined site
      • Ovotransferrin / Gallus gallus :
        •        Undefined site
      • Uncharacterized protein from Egg Cell / Gallus gallus :
        •        Undefined site
      • Acetylcholine receptor protein / Torpedo californica :
        •        Undefined site
      • Saposin c / Homo sapiens :
        •        Undefined site
      • Riboflavin-binding protein / Gallus gallus :
        •        Undefined site

Glycan references

GlyTouCan : G93500PH

UniCarb-DB :

  • 551
  • 575
  • 599
  • 2486


Composition

Hex:3 HexNAc:6


IUPAC

GlcNAc(b1-2)[GlcNAc(b1-4)]Man(a1-3)[GlcNAc(b1-2)Man(a1-6)][GlcNAc(b1-4)]Man(b1-4)GlcNAc(b1-4)GlcNAc

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:b-dglc-HEX-1:5
10s:n-acetyl
11b:b-dglc-HEX-1:5
12s:n-acetyl
13b:a-dman-HEX-1:5
14b:b-dglc-HEX-1:5
15s:n-acetyl
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:6o(4+1)9d
9:9d(2+1)10n
10:5o(4+1)11d
11:11d(2+1)12n
12:5o(6+1)13d
13:13o(2+1)14d
14:14d(2+1)15n


References (5)

Composition of the N-linked carbohydrates from ovalbumin and co-purified glycoproteins. (2000)
Harvey D, Wing D, Kuster B, Wilson I
Pubmed : 10833030   DOI : 10.1016/S1044-0305(00)00122-7
Status : Reviewed

Derivatization and purification of bisecting tyrosinamide-oligosaccharides from ovotransferrin. (1994)
Corradi da Silva M, Tamura T, Rice K
Pubmed : 7986092  
Status : Reviewed

Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient. (1993)
Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien J, Kishimoto Y
Pubmed : 8344278  
Status : Reviewed

Detailed structural analysis of asparagine-linked oligosaccharides of the nicotinic acetylcholine receptor from Torpedo californica. (1992)
Shoji H, Takahashi N, Nomoto H, Ishikawa M, Shimada I, Arata Y, Hayashi K
Pubmed : 1633814  
Status : Reviewed

Structural studies of the sugar chains of hen ovomucoid. Evidence indicating that they are formed mainly by the alternate biosynthetic pathway of asparagine-linked sugar chains. (1983)
Yamashita K, Kamerling JP, Kobata A
Pubmed : 6826553  
Status : Reviewed

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