Automated assignments of N- and O-site specific glycosylation with extensive glycan heterogeneity of glycoprotein mixtures (2013)
Strum JS1, Nwosu CC, Hua S, Kronewitter SR, Seipert RR, Bachelor RJ, An HJ, Lebrilla CB
Anal Chem, 2013 vol.85(12):5666-75
SNFG,
Text,
Oxford
taxonomy (2)
protein (6)
source (3)
structure (15)
composition (44)
disease (0)
reference (1)
site (26)
peptide (0)
- Homo sapiens (Human)
- Bos taurus (Bovine)
Taxonomy
- Lactotransferrin / Homo sapiens P02788
- Polymeric immunoglobulin receptor / Homo sapiens P01833
- Alpha-2-hs-glycoprotein / Bos taurus P12763
- Kappa casein / Bos taurus P02668
- Lactotransferrin / Bos taurus P24627
- Ribonuclease pancreatic [b] / Bos taurus P61823
Protein
- N-Linked / Complex / Structure 2843
- N-Linked / Complex / Structure 1994
- N-Linked / Complex / Structure 348
- N-Linked / Complex / Structure 1497
- N-Linked / Complex / Gal(?1-?)GlcNAc(?1-?)Man(a1-3)[Gal(?1-?)GlcNAc(?1-?)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
- N-Linked / Complex / Gal(?1-?)GlcNAc(?1-?)Man(a1-3)[Gal(?1-?)GlcNAc(?1-?)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc
- N-Linked / Complex / Structure 1344
- N-Linked / Complex / Structure 3507
- N-Linked / Complex / Structure 2014
- N-Linked / Complex / Structure 1854
- N-Linked / Complex / Structure 1523
- N-Linked / Complex / Structure 1945
- N-Linked / Complex / Structure 3222
- N-Linked / Hybrid / Structure 1713
- N-Linked / Hybrid / Structure 3266
Reported structure
- Hex:1 HexNAc:1 (avg mass : 383.3527 )
- Hex:1 HexNAc:1 NeuAc:1 (avg mass : 674.6106 )
- Hex:1 HexNAc:1 NeuAc:2 (avg mass : 965.8685 )
- Hex:2 HexNAc:1 dHex:1 NeuAc:2 (avg mass : 1274.1539 )
- Hex:2 HexNAc:2 NeuAc:1 (avg mass : 1039.948 )
- Hex:2 HexNAc:2 NeuAc:2 (avg mass : 1331.2059 )
- Hex:2 HexNAc:2 dHex:1 (avg mass : 894.8331 )
- Hex:2 HexNAc:2 dHex:1 NeuAc:1 (avg mass : 1186.091 )
- Hex:3 HexNAc:3 (avg mass : 1114.0275 )
- Hex:3 HexNAc:3 dHex:2 (avg mass : 1406.3135 )
- Hex:4 HexNAc:3 (avg mass : 1276.1699 )
- Hex:4 HexNAc:3 dHex:1 (avg mass : 1422.3129 )
- Hex:4 HexNAc:4 (avg mass : 1479.3649 )
- Hex:4 HexNAc:4 dHex:1 (avg mass : 1625.5079 )
- Hex:4 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 1916.7658 )
- Hex:4 HexNAc:4 dHex:2 NeuAc:1 (avg mass : 2062.9088 )
- Hex:4 HexNAc:5 (avg mass : 1682.5599 )
- Hex:4 HexNAc:5 NeuAc:1 (avg mass : 1973.8178 )
- Hex:5 HexNAc:2 (avg mass : 1235.1173 )
- Hex:5 HexNAc:3 (avg mass : 1438.3123 )
- Hex:5 HexNAc:3 NeuAc:1 (avg mass : 1729.5702 )
- Hex:5 HexNAc:3 dHex:2 (avg mass : 1730.5983 )
- Hex:5 HexNAc:4 (avg mass : 1641.5073 )
- Hex:5 HexNAc:4 NeuAc:1 (avg mass : 1932.7652 )
- Hex:5 HexNAc:4 dHex:1 (avg mass : 1787.6503 )
- Hex:5 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 2078.9082 )
- Hex:5 HexNAc:5 NeuAc:1 (avg mass : 2135.9602 )
- Hex:5 HexNAc:5 dHex:1 (avg mass : 1990.8453 )
- Hex:5 HexNAc:5 dHex:1 NeuAc:1 (avg mass : 2282.1032 )
- Hex:5 HexNAc:5 dHex:2 (avg mass : 2136.9883 )
- Hex:5 HexNAc:5 dHex:2 NeuAc:3 (avg mass : 3010.762 )
- Hex:5 HexNAc:5 dHex:3 NeuAc:2 (avg mass : 2865.6471 )
- Hex:5 HexNAc:6 (avg mass : 2047.8973 )
- Hex:5 HexNAc:6 dHex:1 (avg mass : 2194.0403 )
- Hex:6 HexNAc:2 (avg mass : 1397.2597 )
- Hex:6 HexNAc:3 dHex:1 (avg mass : 1746.5977 )
- Hex:6 HexNAc:4 dHex:1 NeuAc:2 (avg mass : 2532.3085 )
- Hex:7 HexNAc:2 (avg mass : 1559.4021 )
- Hex:7 HexNAc:4 (avg mass : 1965.7921 )
- Hex:7 HexNAc:4 dHex:1 (avg mass : 2111.9351 )
- Hex:7 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 2403.193 )
- Hex:7 HexNAc:6 dHex:2 (avg mass : 2664.4681 )
- Hex:8 HexNAc:2 (avg mass : 1721.5445 )
- Hex:9 HexNAc:2 (avg mass : 1883.6869 )
Composition
Disease
- Lactotransferrin / Homo sapiens
- Polymeric immunoglobulin receptor / Homo sapiens
- Alpha-2-hs-glycoprotein / Bos taurus
- Kappa casein / Bos taurus
- Lactotransferrin / Bos taurus
- Ribonuclease pancreatic [b] / Bos taurus
Reported glycosite
Mass spectrometry observed peptide
-
- N-Linked / Complex
(avg mass : 1114.0275)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1276.1699)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1406.3135)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1422.3129)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1641.5073)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1787.6503)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1932.7652)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1932.7652)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2047.8973)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2062.9088)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2078.9082)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2135.9602)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2865.6471)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Hybrid
(avg mass : 1438.3123)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- N-Linked / Hybrid
(avg mass : 1730.5983)
- Milk (UBERON_0001913)
- Lactotransferrin / Homo sapiens
-
- Hex:7 HexNAc:4 dHex:1 NeuAc:1 / N-Linked
(avg mass : 2403.193)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:5 dHex:2 NeuAc:3 / N-Linked
(avg mass : 3010.762)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:2 / N-Linked
(avg mass : 1235.1173)
- Lactotransferrin / Bos taurus
- Ribonuclease pancreatic [b] / Bos taurus
-
- Hex:4 HexNAc:3 / N-Linked
(avg mass : 1276.1699)
- Milk (UBERON_0001913)
- N-Linked / Complex / Structure 1994
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:6 HexNAc:2 / N-Linked
(avg mass : 1397.2597)
- Lactotransferrin / Bos taurus
- Ribonuclease pancreatic [b] / Bos taurus
-
- Hex:3 HexNAc:3 dHex:2 / N-Linked
(avg mass : 1406.3135)
- Milk (UBERON_0001913)
- N-Linked / Complex / Structure 348
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:4 HexNAc:3 dHex:1 / N-Linked
(avg mass : 1422.3129)
- Milk (UBERON_0001913)
- N-Linked / Complex / Structure 1497
- Lactotransferrin / Bos taurus
-
- Hex:5 HexNAc:3 / N-Linked
(avg mass : 1438.3123)
- Milk (UBERON_0001913)
- N-Linked / Hybrid / Structure 1713
- Lactotransferrin / Bos taurus
-
- Hex:4 HexNAc:4 / N-Linked
(avg mass : 1479.3649)
- Milk (UBERON_0001913)
- Lactotransferrin / Bos taurus
-
- Hex:7 HexNAc:2 / N-Linked
(avg mass : 1559.4021)
- Lactotransferrin / Bos taurus
- Ribonuclease pancreatic [b] / Bos taurus
-
- Hex:4 HexNAc:4 dHex:1 / N-Linked
(avg mass : 1625.5079)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:4 / N-Linked
(avg mass : 1641.5073)
- Milk (UBERON_0001913)
- N-Linked / Complex / Gal(?1-?)GlcNAc(?1-?)Man(a1-3)[Gal(?1-?)GlcNAc(?1-?)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:4 HexNAc:5 / N-Linked
(avg mass : 1682.5599)
- Milk (UBERON_0001913)
- Lactotransferrin / Bos taurus
-
- Hex:8 HexNAc:2 / N-Linked
(avg mass : 1721.5445)
- Lactotransferrin / Bos taurus
- Ribonuclease pancreatic [b] / Bos taurus
-
- Hex:5 HexNAc:3 NeuAc:1 / N-Linked
(avg mass : 1729.5702)
- Polymeric immunoglobulin receptor / Homo sapiens
- Alpha-2-hs-glycoprotein / Bos taurus
-
- Hex:6 HexNAc:3 dHex:1 / N-Linked
(avg mass : 1746.5977)
- Pancreas (UBERON_0001264)
- Ribonuclease pancreatic [b] / Bos taurus
-
- Hex:5 HexNAc:4 dHex:1 / N-Linked
(avg mass : 1787.6503)
- Milk (UBERON_0001913)
- N-Linked / Complex / Gal(?1-?)GlcNAc(?1-?)Man(a1-3)[Gal(?1-?)GlcNAc(?1-?)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:9 HexNAc:2 / N-Linked
(avg mass : 1883.6869)
- Lactotransferrin / Bos taurus
- Ribonuclease pancreatic [b] / Bos taurus
-
- Hex:4 HexNAc:4 dHex:1 NeuAc:1 / N-Linked
(avg mass : 1916.7658)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:4 NeuAc:1 / N-Linked
(avg mass : 1932.7652)
- Milk (UBERON_0001913)
- N-Linked / Complex / Structure 1344
- N-Linked / Complex / Structure 3507
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:7 HexNAc:4 / N-Linked
(avg mass : 1965.7921)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:4 HexNAc:5 NeuAc:1 / N-Linked
(avg mass : 1973.8178)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:5 dHex:1 / N-Linked
(avg mass : 1990.8453)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:4 dHex:1 NeuAc:1 / N-Linked
(avg mass : 2078.9082)
- Milk (UBERON_0001913)
- N-Linked / Complex / Structure 1523
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:7 HexNAc:4 dHex:1 / N-Linked
(avg mass : 2111.9351)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:5 dHex:2 / N-Linked
(avg mass : 2136.9883)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:6 dHex:1 / N-Linked
(avg mass : 2194.0403)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:5 HexNAc:5 dHex:1 NeuAc:1 / N-Linked
(avg mass : 2282.1032)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:6 HexNAc:4 dHex:1 NeuAc:2 / N-Linked
(avg mass : 2532.3085)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:7 HexNAc:6 dHex:2 / N-Linked
(avg mass : 2664.4681)
- Milk (UBERON_0001913)
- Polymeric immunoglobulin receptor / Homo sapiens
-
- Hex:1 HexNAc:1 / O-Linked
(avg mass : 383.3527)
- Milk (UBERON_0001913)
- Kappa casein / Bos taurus
-
- Hex:1 HexNAc:1 NeuAc:1 / O-Linked
(avg mass : 674.6106)
- Alpha-2-hs-glycoprotein / Bos taurus
- Kappa casein / Bos taurus
-
- Hex:2 HexNAc:2 dHex:1 / O-Linked
(avg mass : 894.8331)
- Milk (UBERON_0001913)
- Kappa casein / Bos taurus
-
- Hex:1 HexNAc:1 NeuAc:2 / O-Linked
(avg mass : 965.8685)
- Alpha-2-hs-glycoprotein / Bos taurus
- Kappa casein / Bos taurus
-
- Hex:2 HexNAc:2 NeuAc:1 / O-Linked
(avg mass : 1039.948)
- Blood (UBERON_0000178)
- Alpha-2-hs-glycoprotein / Bos taurus
-
- Hex:2 HexNAc:2 dHex:1 NeuAc:1 / O-Linked
(avg mass : 1186.091)
- Milk (UBERON_0001913)
- Kappa casein / Bos taurus
-
- Hex:2 HexNAc:1 dHex:1 NeuAc:2 / O-Linked
(avg mass : 1274.1539)
- Blood (UBERON_0000178)
- Alpha-2-hs-glycoprotein / Bos taurus
-
- Hex:2 HexNAc:2 NeuAc:2 / O-Linked
(avg mass : 1331.2059)
- Blood (UBERON_0000178)
- Alpha-2-hs-glycoprotein / Bos taurus
Source
Suggested structure
Reported glycosite
- Hex:2 HexNAc:2 NeuAc:2 / O-Linked
(avg mass : 1331.2059)
Source
Suggested structure
Reported glycosite
- Hex:2 HexNAc:1 dHex:1 NeuAc:2 / O-Linked
(avg mass : 1274.1539)
Source
Suggested structure
Reported glycosite
- Hex:2 HexNAc:2 dHex:1 NeuAc:1 / O-Linked
(avg mass : 1186.091)
Source
Suggested structure
Reported glycosite
- Hex:2 HexNAc:2 NeuAc:1 / O-Linked
(avg mass : 1039.948)
Suggested structure
Reported glycosite
- Hex:1 HexNAc:1 NeuAc:2 / O-Linked
(avg mass : 965.8685)
Source
Suggested structure
Reported glycosite
- Hex:2 HexNAc:2 dHex:1 / O-Linked
(avg mass : 894.8331)
Suggested structure
Reported glycosite
- Hex:1 HexNAc:1 NeuAc:1 / O-Linked
(avg mass : 674.6106)
Source
Suggested structure
Reported glycosite
- Hex:1 HexNAc:1 / O-Linked
(avg mass : 383.3527)
Source
Suggested structure
Reported glycosite
- Hex:7 HexNAc:6 dHex:2 / N-Linked
(avg mass : 2664.4681)
Source
Suggested structure
Reported glycosite
- Hex:6 HexNAc:4 dHex:1 NeuAc:2 / N-Linked
(avg mass : 2532.3085)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:5 dHex:1 NeuAc:1 / N-Linked
(avg mass : 2282.1032)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:6 dHex:1 / N-Linked
(avg mass : 2194.0403)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:5 dHex:2 / N-Linked
(avg mass : 2136.9883)
Source
Suggested structure
Reported glycosite
- Hex:7 HexNAc:4 dHex:1 / N-Linked
(avg mass : 2111.9351)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:4 dHex:1 NeuAc:1 / N-Linked
(avg mass : 2078.9082)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:5 dHex:1 / N-Linked
(avg mass : 1990.8453)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:5 NeuAc:1 / N-Linked
(avg mass : 1973.8178)
Source
Suggested structure
Reported glycosite
- Hex:7 HexNAc:4 / N-Linked
(avg mass : 1965.7921)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:4 NeuAc:1 / N-Linked
(avg mass : 1932.7652)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:4 dHex:1 NeuAc:1 / N-Linked
(avg mass : 1916.7658)
Suggested structure
Reported glycosite
- Hex:9 HexNAc:2 / N-Linked
(avg mass : 1883.6869)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:4 dHex:1 / N-Linked
(avg mass : 1787.6503)
Source
Suggested structure
Reported glycosite
- Hex:6 HexNAc:3 dHex:1 / N-Linked
(avg mass : 1746.5977)
Suggested structure
Reported glycosite
- Hex:5 HexNAc:3 NeuAc:1 / N-Linked
(avg mass : 1729.5702)
Suggested structure
Reported glycosite
- Hex:8 HexNAc:2 / N-Linked
(avg mass : 1721.5445)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:5 / N-Linked
(avg mass : 1682.5599)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:4 / N-Linked
(avg mass : 1641.5073)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:4 dHex:1 / N-Linked
(avg mass : 1625.5079)
Suggested structure
Reported glycosite
- Hex:7 HexNAc:2 / N-Linked
(avg mass : 1559.4021)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:4 / N-Linked
(avg mass : 1479.3649)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:3 / N-Linked
(avg mass : 1438.3123)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:3 dHex:1 / N-Linked
(avg mass : 1422.3129)
Source
Suggested structure
Reported glycosite
- Hex:3 HexNAc:3 dHex:2 / N-Linked
(avg mass : 1406.3135)
Suggested structure
Reported glycosite
- Hex:6 HexNAc:2 / N-Linked
(avg mass : 1397.2597)
Source
Suggested structure
Reported glycosite
- Hex:4 HexNAc:3 / N-Linked
(avg mass : 1276.1699)
Suggested structure
Reported glycosite
- Hex:5 HexNAc:2 / N-Linked
(avg mass : 1235.1173)
Source
Suggested structure
Reported glycosite
- Hex:5 HexNAc:5 dHex:2 NeuAc:3 / N-Linked
(avg mass : 3010.762)
Source
Suggested structure
Reported glycosite
- Hex:7 HexNAc:4 dHex:1 NeuAc:1 / N-Linked
(avg mass : 2403.193)
Source
Reported glycosite
- N-Linked / Hybrid
(avg mass : 1730.5983)
Source
Reported glycosite
- N-Linked / Hybrid
(avg mass : 1438.3123)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 2865.6471)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 2135.9602)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 2078.9082)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 2062.9088)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 2047.8973)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1932.7652)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1932.7652)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1787.6503)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1641.5073)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1422.3129)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1406.3135)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1276.1699)
Source
Reported glycosite
- N-Linked / Complex
(avg mass : 1114.0275)
