Enrichment of glycopeptides for glycan structure and attachment site identification (2009)
Nilsson J, Rüetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G.
Nat Methods, 2009 vol.6(11):809-11
SNFG,
Text,
Oxford
taxonomy (1)
protein (32)
source (2)
structure (8)
composition (9)
disease (0)
reference (1)
site (47)
peptide (0)
- Homo sapiens (Human)
Taxonomy
- Afamin / Homo sapiens P43652
- Alpha-1-acid glycoprotein 1 / Homo sapiens P02763
- Alpha-1-acid glycoprotein 2 / Homo sapiens P19652
- Alpha-1-antitrypsin / Homo sapiens P01009
- Alpha-1b-glycoprotein / Homo sapiens P04217
- Alpha-2-HS-glycoprotein / Homo sapiens P02765
- Amyloid-like protein 1 / Homo sapiens P51693
- Antithrombin-III / Homo sapiens P01008
- Apolipoprotein C-III / Homo sapiens P02656
- Apolipoprotein D / Homo sapiens P05090
- Apolipoprotein E / Homo sapiens P02649
- Beta-2-glycoprotein 1 / Homo sapiens P02749
- Ceruloplasmin / Homo sapiens P00450
- Clusterin / Homo sapiens P10909
- Complement factor h / Homo sapiens P08603
- Complement factor i / Homo sapiens P05156
- Fractalkine / Homo sapiens P78423
- Haptoglobin / Homo sapiens P00738
- Hemopexin / Homo sapiens P02790
- Immunoglobulin heavy constant alpha 1 / Homo sapiens P01876
- Insulin-like growth factor II / Homo sapiens P01344
- Insulin-like growth factor-binding protein 6 / Homo sapiens P24592
- Kininogen-1 / Homo sapiens P01042
- Leucine-rich alpha-2-glycoprotein / Homo sapiens P02750
- Mimecan / Homo sapiens P20774
- Monocyte differentiation antigen cd14 / Homo sapiens P08571
- Plasma protease c1 inhibitor / Homo sapiens P05155
- Prosaas / Homo sapiens Q9UHG2
- Prostaglandin-h2 d-isomerase / Homo sapiens P41222
- Prothrombin / Homo sapiens P00734
- Serotransferrin / Homo sapiens P02787
- Thyroxine-binding globulin / Homo sapiens P05543
Protein
- N-Linked / Complex / Structure 2011
- N-Linked / Complex / Gal(?1-?)GlcNAc(?1-?)Man(a1-3)[Gal(?1-?)GlcNAc(?1-?)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
- N-Linked / Complex / Structure 3041
- N-Linked / Complex / Structure 1586
- N-Linked / Complex / Structure 2369
- N-Linked / Complex / Structure 644
- N-Linked / Complex / Structure 3534
- N-Linked / Complex / Structure 720
Reported structure
- Hex:1 HexNAc:1 (avg mass : 383.3527 )
- Hex:4 HexNAc:4 (avg mass : 1479.3649 )
- Hex:5 HexNAc:4 (avg mass : 1641.5073 )
- Hex:5 HexNAc:4 dHex:1 (avg mass : 1787.6503 )
- Hex:5 HexNAc:5 (avg mass : 1844.7023 )
- Hex:5 HexNAc:5 dHex:1 (avg mass : 1990.8453 )
- Hex:6 HexNAc:5 (avg mass : 2006.8447 )
- Hex:6 HexNAc:5 dHex:1 (avg mass : 2152.9877 )
- Hex:7 HexNAc:6 (avg mass : 2372.1821 )
Composition
Disease
- Afamin / Homo sapiens
- Alpha-1-acid glycoprotein 1 / Homo sapiens
- Alpha-1-acid glycoprotein 2 / Homo sapiens
- Alpha-1-antitrypsin / Homo sapiens
- Alpha-1b-glycoprotein / Homo sapiens
- Alpha-2-HS-glycoprotein / Homo sapiens
- Amyloid-like protein 1 / Homo sapiens
- Antithrombin-III / Homo sapiens
- Apolipoprotein C-III / Homo sapiens
- Apolipoprotein D / Homo sapiens
- Apolipoprotein E / Homo sapiens
- Beta-2-glycoprotein 1 / Homo sapiens
- Ceruloplasmin / Homo sapiens
- Clusterin / Homo sapiens
- Complement factor h / Homo sapiens
- Complement factor i / Homo sapiens
- Fractalkine / Homo sapiens
- Haptoglobin / Homo sapiens
- Hemopexin / Homo sapiens
- Immunoglobulin heavy constant alpha 1 / Homo sapiens
- Insulin-like growth factor II / Homo sapiens
- Insulin-like growth factor-binding protein 6 / Homo sapiens
- Kininogen-1 / Homo sapiens
- Leucine-rich alpha-2-glycoprotein / Homo sapiens
- Mimecan / Homo sapiens
- Monocyte differentiation antigen cd14 / Homo sapiens
- Plasma protease c1 inhibitor / Homo sapiens
- Prosaas / Homo sapiens
- Prostaglandin-h2 d-isomerase / Homo sapiens
- Prothrombin / Homo sapiens
- Serotransferrin / Homo sapiens
- Thyroxine-binding globulin / Homo sapiens
Reported glycosite
Mass spectrometry observed peptide
-
- N-Linked / Complex
(avg mass : 1479.3649)
- Afamin / Homo sapiens
- Alpha-1-antitrypsin / Homo sapiens
- Beta-2-glycoprotein 1 / Homo sapiens
- Hemopexin / Homo sapiens
- Leucine-rich alpha-2-glycoprotein / Homo sapiens
- Serotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1641.5073)
- Afamin / Homo sapiens
- Alpha-1-acid glycoprotein 1 / Homo sapiens
- Alpha-1-antitrypsin / Homo sapiens
- Alpha-1b-glycoprotein / Homo sapiens
- Alpha-2-HS-glycoprotein / Homo sapiens
- Antithrombin-III / Homo sapiens
- Apolipoprotein D / Homo sapiens
- Beta-2-glycoprotein 1 / Homo sapiens
- Ceruloplasmin / Homo sapiens
- Clusterin / Homo sapiens
- Complement factor h / Homo sapiens
- Complement factor i / Homo sapiens
- Haptoglobin / Homo sapiens
- Hemopexin / Homo sapiens
- Immunoglobulin heavy constant alpha 1 / Homo sapiens
- Leucine-rich alpha-2-glycoprotein / Homo sapiens
- Plasma protease c1 inhibitor / Homo sapiens
- Prostaglandin-h2 d-isomerase / Homo sapiens
- Prothrombin / Homo sapiens
- Serotransferrin / Homo sapiens
- Thyroxine-binding globulin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1787.6503)
- Afamin / Homo sapiens
- Alpha-1-antitrypsin / Homo sapiens
- Alpha-2-HS-glycoprotein / Homo sapiens
- Apolipoprotein D / Homo sapiens
- Beta-2-glycoprotein 1 / Homo sapiens
- Ceruloplasmin / Homo sapiens
- Clusterin / Homo sapiens
- Hemopexin / Homo sapiens
- Prostaglandin-h2 d-isomerase / Homo sapiens
- Serotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1844.7023)
- Immunoglobulin heavy constant alpha 1 / Homo sapiens
- Prostaglandin-h2 d-isomerase / Homo sapiens
-
- N-Linked / Complex
(avg mass : 1990.8453)
- Prostaglandin-h2 d-isomerase / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2006.8447)
- Afamin / Homo sapiens
- Alpha-1-acid glycoprotein 1 / Homo sapiens
- Alpha-1-acid glycoprotein 2 / Homo sapiens
- Alpha-1-antitrypsin / Homo sapiens
- Alpha-1b-glycoprotein / Homo sapiens
- Alpha-2-HS-glycoprotein / Homo sapiens
- Beta-2-glycoprotein 1 / Homo sapiens
- Hemopexin / Homo sapiens
- Kininogen-1 / Homo sapiens
- Leucine-rich alpha-2-glycoprotein / Homo sapiens
- Prostaglandin-h2 d-isomerase / Homo sapiens
- Serotransferrin / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2152.9877)
- Alpha-1-acid glycoprotein 1 / Homo sapiens
- Alpha-1-acid glycoprotein 2 / Homo sapiens
- Beta-2-glycoprotein 1 / Homo sapiens
- Clusterin / Homo sapiens
- Hemopexin / Homo sapiens
- Kininogen-1 / Homo sapiens
- Leucine-rich alpha-2-glycoprotein / Homo sapiens
-
- N-Linked / Complex
(avg mass : 2372.1821)
- Alpha-1-acid glycoprotein 1 / Homo sapiens
-
- Hex:1 HexNAc:1 / O-Linked
(avg mass : 383.3527)
- Amyloid-like protein 1 / Homo sapiens
- Apolipoprotein C-III / Homo sapiens
- Apolipoprotein E / Homo sapiens
- Fractalkine / Homo sapiens
- Hemopexin / Homo sapiens
- Insulin-like growth factor II / Homo sapiens
- Insulin-like growth factor-binding protein 6 / Homo sapiens
- Mimecan / Homo sapiens
- Monocyte differentiation antigen cd14 / Homo sapiens
- Prosaas / Homo sapiens
Suggested structure
Reported glycosite
- Hex:1 HexNAc:1 / O-Linked
(avg mass : 383.3527)
Reported glycosite
- N-Linked / Complex
(avg mass : 2372.1821)
Reported glycosite
- N-Linked / Complex
(avg mass : 2152.9877)
Reported glycosite
- N-Linked / Complex
(avg mass : 2006.8447)
Reported glycosite
- N-Linked / Complex
(avg mass : 1990.8453)
Reported glycosite
- N-Linked / Complex
(avg mass : 1844.7023)
Reported glycosite
- N-Linked / Complex
(avg mass : 1787.6503)
Reported glycosite
- N-Linked / Complex
(avg mass : 1641.5073)
Reported glycosite
- N-Linked / Complex
(avg mass : 1479.3649)
