GlyConnect

Site	Core / Type	Cartoon	Composition	Biological associations
Undefined site	O-Linked / Core 1		Hex:1 HexNAc:1	Taxonomy (1) Protein (1) Source (2) Structure (0) Composition (1) Disease (0) Reference (2) Site (1) Peptide (0) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Urine (UBERON_0001088) Cerebrospinal Fluid Secretion (GO_0033326) Reported structure Composition Hex:1 HexNAc:1 (avg mass : 383.3527 ) Disease Reference LC-MS/MS characterization of O-glycosylation sites and glycan structures of human cerebrospinal fluid glycoproteins (2013 - Halim A, Rüetschi U, Larson G, Nilsson J) / Status : Reviewed Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD (2012 - Halim A, Nilsson J, Rüetschi U, Hesse C, Larson G) / Status : Reviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Undefined site Mass spectrometry validated peptide
Asn-130	N-Linked / Undefined core		Hex:5 HexNAc:4 dHex:1 NeuAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (1) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:5 HexNAc:4 dHex:1 NeuAc:2 (avg mass : 2370.1661 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:7 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (1) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:7 HexNAc:2 (avg mass : 1559.4021 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:5 HexNAc:4 dHex:1 NeuAc:1	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (1) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:5 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 2078.9082 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:12 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (1) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:12 HexNAc:2 (avg mass : 2370.1141 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:6 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (2) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:6 HexNAc:2 (avg mass : 1397.2597 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Asn-136 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:9 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (2) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:9 HexNAc:2 (avg mass : 1883.6869 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Asn-136 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:8 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (2) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:8 HexNAc:2 (avg mass : 1721.5445 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Asn-136 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-130	N-Linked / Undefined core		Hex:5 HexNAc:4 dHex:4	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (1) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:5 HexNAc:4 dHex:4 Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Mass spectrometry validated peptide MATPIIMQAIPMGAIPQGPMQNATK (25aa) P04233 Asn-130
Asn-136	N-Linked / Undefined core		Hex:6 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (2) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:6 HexNAc:2 (avg mass : 1397.2597 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Asn-136 Mass spectrometry validated peptide YGNMTEDHVMHIIQNADPIK (20aa) P04233 Asn-136
Asn-136	N-Linked / Undefined core		Hex:9 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (2) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:9 HexNAc:2 (avg mass : 1883.6869 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Asn-136 Mass spectrometry validated peptide YGNMTEDHVMHIIQNADPIK (20aa) P04233 Asn-136
Asn-136	N-Linked / Undefined core		Hex:8 HexNAc:2	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (2) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:8 HexNAc:2 (avg mass : 1721.5445 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-130 Asn-136 Mass spectrometry validated peptide YGNMTEDHVMHIIQNADPIK (20aa) P04233 Asn-136
Asn-136	N-Linked / Undefined core		Hex:5 HexNAc:4 dHex:3	Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (1) Disease (1) Reference (1) Site (1) Peptide (1) Taxonomy Homo sapiens (Human) Protein HLA class II histocompatibility antigen gamma chain / Homo sapiens P04233 Source Mammary Gland (UBERON_0001911) Reported structure Composition Hex:5 HexNAc:4 dHex:3 (avg mass : 2079.9363 ) Disease Cancer, breast (DOID:1612) Reference Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018 - Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang) / Status : Unreviewed Reported glycosite HLA class II histocompatibility antigen gamma chain / Homo sapiens : Asn-136 Mass spectrometry validated peptide YGNMTEDHVMHIIQNADPIK (20aa) P04233 Asn-136

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