Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer
Taxonomy : Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
SNFG, Text, Oxford
taxonomy (1)
protein (1)
source (1)
structure (2)
composition (2)
disease (1)
reference (1)
site (13)
peptide (14)
- Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) P0DTC2
Protein
- HEK293-F (CVCL_6642)
Source
- O-Linked / Core 0 / GalNAc
- O-Linked / Core 1 / Gal(b1-3)GalNAc
Reported structure
- COVID-19 (DOID:0080600)
Disease
- Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
Reported glycosite
- FSNVTWFHAIHVSGTNGTK (19aa)
- HAIHVSGTNGTK (12aa)
- P0DTC2 Thr-76     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- P0DTC2 Thr-73     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- HAIHVSGTNGTKRF (14aa)
- VSGTNGTKRF (10aa)
- TQSLLIVNNATNVVIK (16aa)
- VYSSANNCTFEYVSQPFLMDLEGK (24aa)
- SALEPLVDLPIGINIT (16aa)
- VDLPIGINIT (10aa)
- TPCNGVEGFNCY (12aa)
- QTQTNSPGSASSVASQ (16aa)
- P0DTC2 Thr-678     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- P0DTC2 Thr-676     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- QTQTNSPGSASSVASQSIIAY (21aa)
- P0DTC2 Thr-678     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- P0DTC2 Thr-676     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- DFGGFNFSQILPDPSK (16aa)
- AQEKNFTTAPAICHDGKAHFPREGVF (26aa)
- P0DTC2 Thr-1076     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- P0DTC2 Thr-1077     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- EGVFVSNGTHW (11aa)
Mass spectrometry observed peptide
-
- O-Linked / Core 0
(avg mass : 221.2103)
- HEK293-F (CVCL_6642)
- COVID-19 (DOID:0080600)
- Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- FSNVTWFHAIHVSGTNGTK (19aa)
- HAIHVSGTNGTK (12aa)
- P0DTC2 Thr-76     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- P0DTC2 Thr-73     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- VSGTNGTKRF (10aa)
- HAIHVSGTNGTKRF (14aa)
- TQSLLIVNNATNVVIK (16aa)
- VYSSANNCTFEYVSQPFLMDLEGK (24aa)
- SALEPLVDLPIGINIT (16aa)
- VDLPIGINIT (10aa)
- DFGGFNFSQILPDPSK (16aa)
- AQEKNFTTAPAICHDGKAHFPREGVF (26aa)
- P0DTC2 Thr-1076     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- P0DTC2 Thr-1077     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- EGVFVSNGTHW (11aa)
-
- O-Linked / Core 1
(avg mass : 383.3527)
- HEK293-F (CVCL_6642)
- COVID-19 (DOID:0080600)
- Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- TPCNGVEGFNCY (12aa)
- QTQTNSPGSASSVASQ (16aa)
- P0DTC2 Thr-678     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- P0DTC2 Thr-676     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- QTQTNSPGSASSVASQSIIAY (21aa)
- P0DTC2 Thr-678     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
- P0DTC2 Thr-676     Recombinant Spike glycoprotein (HEK293-F) - ectodomain trimer / Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
- 682:RRAR→GSAS
Source
Disease
Reported glycosite
Mass spectrometry observed peptide
Suggested glycosite
- O-Linked / Core 1
(avg mass : 383.3527)
Source
Disease
Reported glycosite
Mass spectrometry observed peptide
Suggested glycosite
- O-Linked / Core 0
(avg mass : 221.2103)