GlyConnect

Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (19) Disease (1) Site (2) Peptide (2)

Taxonomy

Homo sapiens (Human)

Protein

Transmembrane protein 87A / Homo sapiens Q8NBN3

Source

Mammary Gland (UBERON_0001911)

Reported structure

Composition

Disease

Cancer, breast (DOID:1612)

Reported glycosite

Transmembrane protein 87A / Homo sapiens :
- Asn-62
- Asn-127

Mass spectrometry validated peptide

NTTIFLK (7aa)
- Q8NBN3 Asn-62
IFQNCSEIFK (10aa)
- Q8NBN3 Asn-127

- Hex:6 HexNAc:3 dHex:2
- Hex:6 HexNAc:5 dHex:3 NeuAc:1
- Hex:3 HexNAc:6 (avg mass : 1723.6125 )
- Hex:8 HexNAc:7 NeuAc:1
- Hex:5 HexNAc:4 dHex:4
- Hex:3 HexNAc:6 dHex:3 (avg mass : 2162.0415 )
- Hex:6 HexNAc:3 NeuAc:1 (avg mass : 1891.7126 )
- Hex:6 HexNAc:5 dHex:2 (avg mass : 2299.1307 )
- Hex:6 HexNAc:3 (avg mass : 1600.4547 )
- Hex:6 HexNAc:2 (avg mass : 1397.2597 )
- Hex:5 HexNAc:3 NeuAc:1 (avg mass : 1729.5702 )
- Hex:9 HexNAc:8 dHex:1 (avg mass : 3248.9999 )
- Hex:8 HexNAc:7 (avg mass : 2737.5195 )
- Hex:6 HexNAc:3 dHex:1 NeuAc:1 (avg mass : 2037.8556 )
- Hex:4 HexNAc:6 (avg mass : 1885.7549 )
- Hex:6 HexNAc:5 dHex:1 NeuAc:3 (avg mass : 3026.7614 )
- Hex:6 HexNAc:5 NeuAc:1 (avg mass : 2298.1026 )
- Hex:3 HexNAc:6 dHex:1 NeuAc:1 (avg mass : 2161.0134 )
- Hex:7 HexNAc:2 (avg mass : 1559.4021 )

Protein and gene references

UniProtKB : Q8NBN3

neXtProt : NX_Q8NBN3

GeneCards : TMEM87A

3D structure from PDB

Either no PDB or existing PDB of non-glycosylated form

References (1)

Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018)
Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang
Pubmed : 29741879 DOI : 10.1021/acs.analchem.8b01137
Status : Unreviewed