GlyConnect

Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (7) Disease (1) Site (1) Peptide (1)

Taxonomy

Homo sapiens (Human)

Protein

HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens P04440

Source

Mammary Gland (UBERON_0001911)

Reported structure

Composition

Disease

Cancer, breast (DOID:1612)

Reported glycosite

HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
- Asn-48

Mass spectrometry validated peptide

QECYAFNGTQR (11aa)
- P04440 Asn-48

- Hex:7 HexNAc:2 (avg mass : 1559.4021 )
- Hex:8 HexNAc:2 (avg mass : 1721.5445 )
- Hex:4 HexNAc:3 dHex:1 NeuAc:1 (avg mass : 1713.5708 )
- Hex:3 HexNAc:3 dHex:1 (avg mass : 1260.1705 )
- Hex:6 HexNAc:2 (avg mass : 1397.2597 )
- Hex:3 HexNAc:2 dHex:1 (avg mass : 1056.9755 )
- Hex:5 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 2078.9082 )

Protein and gene references

UniProtKB : P04440

neXtProt : NX_P04440

GeneCards : HLA-DPB1

3D structure from PDB

Select a PDB entry

Github Wiki

3D visualization by LiteMol

References (1)

Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018)
Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang
Pubmed : 29741879 DOI : 10.1021/acs.analchem.8b01137
Status : Unreviewed