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  • HLA class II histocompatibility antigen, DP beta 1 chain

HLA class II histocompatibility antigen, DP beta 1 chain

Taxonomy : Homo sapiens

SNFG, Text, Oxford
Taxonomy (1) Protein (1) Source (1) Structure (0) Composition (7) Disease (1) Site (1) Peptide (1)

    Taxonomy

  • Homo sapiens (Human)

    Protein

  • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens    P04440

    Source

  • Mammary Gland (UBERON_0001911)  

    Reported structure

    Composition

  • Hex:5 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 2078.9082 )
  • Hex:8 HexNAc:2 (avg mass : 1721.5445 )
  • Hex:3 HexNAc:3 dHex:1 (avg mass : 1260.1705 )
  • Hex:3 HexNAc:2 dHex:1 (avg mass : 1056.9755 )
  • Hex:6 HexNAc:2 (avg mass : 1397.2597 )
  • Hex:7 HexNAc:2 (avg mass : 1559.4021 )
  • Hex:4 HexNAc:3 dHex:1 NeuAc:1 (avg mass : 1713.5708 )

    Disease

  • Cancer, breast (DOID:1612)

    Reported glycosite

  • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
    •        Asn-48

    Mass spectrometry validated peptide

  • QECYAFNGTQR (11aa)
    •    P04440    Asn-48
  • 7 x 2 x
    • Hex:7 HexNAc:2 (avg mass : 1559.4021 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48
  • 8 x 2 x
    • Hex:8 HexNAc:2 (avg mass : 1721.5445 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48
  • 4 x 3 x 1 x 1 x
    • Hex:4 HexNAc:3 dHex:1 NeuAc:1 (avg mass : 1713.5708 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48
  • 3 x 3 x 1 x
    • Hex:3 HexNAc:3 dHex:1 (avg mass : 1260.1705 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48
  • 6 x 2 x
    • Hex:6 HexNAc:2 (avg mass : 1397.2597 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48
  • 3 x 2 x 1 x
    • Hex:3 HexNAc:2 dHex:1 (avg mass : 1056.9755 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48
  • 5 x 4 x 1 x 1 x
    • Hex:5 HexNAc:4 dHex:1 NeuAc:1 (avg mass : 2078.9082 )
    • Site (1) Suggested Structure (0)

        Suggested structure

        Reported glycosite

      • HLA class II histocompatibility antigen, DP beta 1 chain / Homo sapiens :
        •        Asn-48

Protein and gene references

UniProtKB : P04440

neXtProt : NX_P04440

GeneCards : HLA-DPB1

3D structure from PDB

Github   Wiki
3D visualization by LiteMol

References (1)

Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018)
Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang
Pubmed : 29741879   DOI : 10.1021/acs.analchem.8b01137
Status : Unreviewed

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