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  • Hex:3 HexNAc:6 dHex:2 NeuAc:1

Hex:3 HexNAc:6 dHex:2 NeuAc:1

SNFG, Text, Oxford
Taxonomy (1) Protein (32) Source (5) Structure (3) Composition (1) Disease (3) Site (35) Peptide (29)

    Taxonomy

  • Homo sapiens (Human)

    Protein

  • Alpha-1-antitrypsin / Homo sapiens    P01009
  • Fibronectin / Homo sapiens    P02751
  • Uromodulin / Homo sapiens    P07911
  • Biglycan / Homo sapiens    P21810
  • Interstitial collagenase / Homo sapiens    P03956
  • Olfactomedin-like protein 3 / Homo sapiens    Q9NRN5
  • Clusterin / Homo sapiens    P10909
  • Apolipoprotein d / Homo sapiens    P05090
  • Transmembrane 9 superfamily member 3 / Homo sapiens    Q9HD45
  • Prostaglandin-h2 d-isomerase / Homo sapiens    P41222
  • Coiled-coil domain-containing protein 138 / Homo sapiens    Q96M89
  • CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 / Homo sapiens    Q11201
  • Golgi apparatus protein 1 / Homo sapiens    Q92896
  • Prolactin-inducible protein / Homo sapiens    P12273
  • N-acetylglucosamine-6-sulfatase / Homo sapiens    P15586
  • Lumican / Homo sapiens    P51884
  • Immunoglobulin heavy constant mu / Homo sapiens    P01871
  • Interleukin-18-binding protein / Homo sapiens    O95998
  • Golgi membrane protein 1 / Homo sapiens    Q8NBJ4
  • Basement membrane-specific heparan sulfate proteoglycan core protein / Homo sapiens    P98160
  • Golgin subfamily A member 8A / Homo sapiens    A7E2F4
  • Golgin subfamily A member 8B / Homo sapiens    A8MQT2
  • Vitamin k-dependent protein c / Homo sapiens    P04070
  • Zinc-alpha-2-glycoprotein / Homo sapiens    P25311
  • Ig alpha-2 chain c region / Homo sapiens    P01877
  • Telomere-associated protein RIF1 / Homo sapiens    Q5UIP0
  • Glycodelin-a / Homo sapiens    P09466
  • YTH domain-containing family protein 3 / Homo sapiens    Q7Z739
  • Prolargin / Homo sapiens    P51888
  • Ephrin-A3 / Homo sapiens    P52797
  • Protein AMBP / Homo sapiens    P02760
  • GDNF family receptor alpha-1 / Homo sapiens    P56159

    Source

  • HEK293-EBNA (CVCL_6974)   Kidney (UBERON_0002113)  
  • HT-1080 (CVCL_0317)   Acetabular Part of Hip Bone (UBERON_0001269)   Fibroblast (CL_0000057)  
  • Amniotic Fluid (UBERON_0000173)  
  • Mammary Gland (UBERON_0001911)  
  • Urine (UBERON_0001088)  

    Reported structure

  • N-Linked / Complex / Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-?)[GalNAc(b1-4)GlcNAc(b1-2)Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc+"+ NeuAc"
  • N-Linked / Complex / NeuAc(a2-6)GalNAc(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc
  • N-Linked / Complex / NeuAc(a2-6)GalNAc(b1-4)GlcNAc(b1-2)Man(a1-?)[Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc

    Composition

  • Hex:3 HexNAc:6 dHex:2 NeuAc:1 (avg mass : 2307.1564 )

    Disease

  • Prostate cancer (DOID:10283)
  • Cancer, breast (DOID:1612)
  • Fibrosarcoma (DOID:3355)

    Reported glycosite

  • Ig alpha-2 chain c region / Homo sapiens :
    •        Asn-205
  • Interstitial collagenase / Homo sapiens :
    •        Asn-120
  • Fibronectin / Homo sapiens :
    •        Asn-528
  • GDNF family receptor alpha-1 / Homo sapiens :
    •        Asn-59
  • Golgi membrane protein 1 / Homo sapiens :
    •        Asn-109
  • YTH domain-containing family protein 3 / Homo sapiens :
    •        Asn-175
  • Ephrin-A3 / Homo sapiens :
    •        Asn-100
  • Telomere-associated protein RIF1 / Homo sapiens :
    •        Asn-105
  • Protein AMBP / Homo sapiens :
    •        Asn-250
  • Apolipoprotein d / Homo sapiens :
    •        Asn-98
  • N-acetylglucosamine-6-sulfatase / Homo sapiens :
    •        Asn-422
  • Lumican / Homo sapiens :
    •        Asn-127
  • Vitamin k-dependent protein c / Homo sapiens :
    •        Undefined site
  • Golgin subfamily A member 8A / Homo sapiens :
    •        Asn-117
  • Alpha-1-antitrypsin / Homo sapiens :
    •        Asn-271
  • Prostaglandin-h2 d-isomerase / Homo sapiens :
    •        Asn-51
    •        Asn-78
  • Glycodelin-a / Homo sapiens :
    •        Asn-81
  • Immunoglobulin heavy constant mu / Homo sapiens :
    •        Asn-209
  • Zinc-alpha-2-glycoprotein / Homo sapiens :
    •        Asn-109
  • Uromodulin / Homo sapiens :
    •        Asn-513
  • Golgi apparatus protein 1 / Homo sapiens :
    •        Asn-210
    •        Asn-581
  • Interleukin-18-binding protein / Homo sapiens :
    •        Asn-147
  • Prolargin / Homo sapiens :
    •        Asn-124
  • Prolactin-inducible protein / Homo sapiens :
    •        Asn-105
  • Golgin subfamily A member 8B / Homo sapiens :
    •        Asn-89
  • Coiled-coil domain-containing protein 138 / Homo sapiens :
    •        Asn-279
  • Basement membrane-specific heparan sulfate proteoglycan core protein / Homo sapiens :
    •        Asn-89
  • Clusterin / Homo sapiens :
    •        Asn-374
  • CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 / Homo sapiens :
    •        Asn-114
  • Biglycan / Homo sapiens :
    •        Asn-270
    •        Asn-311
  • Olfactomedin-like protein 3 / Homo sapiens :
    •        Asn-248
  • Transmembrane 9 superfamily member 3 / Homo sapiens :
    •        Asn-174

    Mass spectrometry validated peptide

  • WFSAGLASNSSWLR (14aa)
    •    P41222    Asn-51
  • ETNFSIASGIEAK (13aa)
    •    P56159    Asn-59
  • SVVAPATDGGLNLTSTFLR (19aa)
    •    P41222    Asn-78
  • LNDTLK (6aa)
    •    A7E2F4    Asn-117
  • LNDTLK (6aa)
    •    Q11201    Asn-114
  • LNDTLK (6aa)
    •    Q96M89    Asn-279
  • LNDTLK (6aa)
    •    Q5UIP0    Asn-105
  • LNDTLK (6aa)
    •    A8MQT2    Asn-89
  • AIVNFTR (7aa)
    •    P98160    Asn-89
  • ADGTVNQIEGEATPVNLTEPAKLEVK (26aa)
    •    P05090    Asn-98
  • TCNASQGFK (9aa)
    •    P52797    Asn-100
  • TFYWDFYTNR (10aa)
    •    P12273    Asn-105
  • AVIVNNITTGER (12aa)
    •    Q8NBJ4    Asn-109
  • DIVEYYNDSNGSHVIQGR (18aa)
    •    P25311    Asn-109
  • IHYLYLQNNFITELPVESFQNATGLR (26aa)
    •    P51888    Asn-124
  • LHINHNNLTESVGPLPK (17aa)
    •    P51884    Asn-127
  • KLHINHNNLTESVGPLPK (18aa)
    •    P51884    Asn-127
  • ALVLEQLTPALHSTNFSCVLVDPEQVVQR (29aa)
    •    O95998    Asn-147
  • NLTSEGK (7aa)
    •    Q9HD45    Asn-174
  • AITDGQAGFGNDTLSK (16aa)
    •    Q7Z739    Asn-175
  • TPLTANITK (9aa)
    •    P01877    Asn-205
  • GITFQQNASSMCVPDQDTAIR (21aa)
    •    P01871    Asn-209
  • GNITEYQCHQYITK (14aa)
    •    Q92896    Asn-210
  • FHLANR (6aa)
    •    Q9NRN5    Asn-248
  • YFYNGTSMACETFQYGGCMGNGNNFVTEK (29aa)
    •    P02760    Asn-250
  • MIENGSISFIPTIR (14aa)
    •    P21810    Asn-270
  • YIGNATAIFFIPDEGK (16aa)
    •    P01009    Asn-271
  • IIQVVYIHSNNITK (14aa)
    •    P21810    Asn-311
  • IANITQGEDQYYIR (14aa)
    •    P10909    Asn-374
  • NVTDPTCPSLSPGVSQCFPDCVCEDAYNNTYACVR (35aa)
    •    P15586    Asn-422
  • FALLMTNCYATPSSNATDPLK (21aa)
    •    P07911    Asn-513
  • DQCIVDDITYNVNDTFHK (18aa)
    •    P02751    Asn-528
  • ICHTHGWNETSEFMPQGAVFSCIYR (25aa)
    •    Q92896    Asn-581
  • No image
    • N-Linked / Complex (avg mass : 2307.1564 )
    • Site (1)

        Reported glycosite

      • Interstitial collagenase / Homo sapiens :
        •        Asn-120
  • No image
    • N-Linked / Complex (avg mass : 2307.1564 )
    • Site (1)

        Reported glycosite

      • Vitamin k-dependent protein c / Homo sapiens :
        •        Undefined site
  • No image
    • N-Linked / Complex (avg mass : 2307.1564 )
    • Site (1)

        Reported glycosite

      • Glycodelin-a / Homo sapiens :
        •        Asn-81
  • 3 x 6 x 2 x 1 x
    • Hex:3 HexNAc:6 dHex:2 NeuAc:1 (avg mass : 2307.1564 )
    • Site (32) Suggested Structure (3)

        Suggested structure

      • N-Linked / Complex / NeuAc(a2-6)GalNAc(b1-4)GlcNAc(b1-2)Man(a1-3)[Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc
      • N-Linked / Complex / Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-?)[GalNAc(b1-4)GlcNAc(b1-2)Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc+"+ NeuAc"
      • N-Linked / Complex / NeuAc(a2-6)GalNAc(b1-4)GlcNAc(b1-2)Man(a1-?)[Fuc(a1-3)[GalNAc(b1-4)]GlcNAc(b1-2)Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc

        Reported glycosite

      • Ig alpha-2 chain c region / Homo sapiens :
        •        Asn-205
      • Fibronectin / Homo sapiens :
        •        Asn-528
      • GDNF family receptor alpha-1 / Homo sapiens :
        •        Asn-59
      • Golgi membrane protein 1 / Homo sapiens :
        •        Asn-109
      • YTH domain-containing family protein 3 / Homo sapiens :
        •        Asn-175
      • Ephrin-A3 / Homo sapiens :
        •        Asn-100
      • Telomere-associated protein RIF1 / Homo sapiens :
        •        Asn-105
      • Protein AMBP / Homo sapiens :
        •        Asn-250
      • Apolipoprotein d / Homo sapiens :
        •        Asn-98
      • N-acetylglucosamine-6-sulfatase / Homo sapiens :
        •        Asn-422
      • Lumican / Homo sapiens :
        •        Asn-127
      • Golgin subfamily A member 8A / Homo sapiens :
        •        Asn-117
      • Alpha-1-antitrypsin / Homo sapiens :
        •        Asn-271
      • Prostaglandin-h2 d-isomerase / Homo sapiens :
        •        Asn-51
        •        Asn-78
      • Immunoglobulin heavy constant mu / Homo sapiens :
        •        Asn-209
      • Zinc-alpha-2-glycoprotein / Homo sapiens :
        •        Asn-109
      • Uromodulin / Homo sapiens :
        •        Asn-513
      • Golgi apparatus protein 1 / Homo sapiens :
        •        Asn-210
        •        Asn-581
      • Interleukin-18-binding protein / Homo sapiens :
        •        Asn-147
      • Prolargin / Homo sapiens :
        •        Asn-124
      • Prolactin-inducible protein / Homo sapiens :
        •        Asn-105
      • Golgin subfamily A member 8B / Homo sapiens :
        •        Asn-89
      • Coiled-coil domain-containing protein 138 / Homo sapiens :
        •        Asn-279
      • Basement membrane-specific heparan sulfate proteoglycan core protein / Homo sapiens :
        •        Asn-89
      • Clusterin / Homo sapiens :
        •        Asn-374
      • CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 / Homo sapiens :
        •        Asn-114
      • Biglycan / Homo sapiens :
        •        Asn-270
        •        Asn-311
      • Olfactomedin-like protein 3 / Homo sapiens :
        •        Asn-248
      • Transmembrane 9 superfamily member 3 / Homo sapiens :
        •        Asn-174

Composition mass

Average mass : 2307.1564 Da

Monoisotopic mass : 2305.8566 Da

References (5)

Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018)
Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang
Pubmed : 29741879   DOI : 10.1021/acs.analchem.8b01137
Status : Unreviewed

Distinct urinary glycoprotein signatures in prostate cancer patients (2018)
Rebeca Kawahara, Fabio Ortega, Livia Rosa-Fernandes, Vanessa Guimarães, Daniel Quina, Willian Nahas, Veit Schwämmle, Miguel Srougi, Katia R.M. Leite, Morten Thaysen-Andersen, Martin R. Larsen and Giuseppe Palmisano
Pubmed : 30237853   DOI : 10.18632/oncotarget.26005
Status : Unreviewed

N-glycan structures of matrix metalloproteinase-1 derived from human fibroblasts and from HT-1080 fibrosarcoma cells. (1999)
Saarinen J, Welgus H, Flizar C, Kalkkinen N, Helin J
Pubmed : 10092871  
Status : Reviewed

Structural analysis of the oligosaccharides derived from glycodelin, a human glycoprotein with potent immunosuppressive and contraceptive activities. (1995)
Dell A, Morris H, Easton R, Panico M, Patankar M, Oehniger S, Koistinen R, Koistinen H, Seppala M, Clark G
Pubmed : 7592613  
Status : Reviewed

Novel Asn-linked oligosaccharides terminating in GalNAc beta (1-->4)[Fuc alpha (1-->3)]GlcNAc beta (1-->.) are present in recombinant human protein C expressed in human kidney 293 cells. (1993)
Yan S, Chao Y, van Halbeek H
Pubmed : 8130392  
Status : Reviewed

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