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  • Hex:5 HexNAc:6 dHex:1 NeuAc:1

Hex:5 HexNAc:6 dHex:1 NeuAc:1

SNFG, Text, Oxford
Taxonomy (2) Protein (36) Source (4) Structure (3) Composition (1) Disease (2) Site (45) Peptide (44)

    Taxonomy

  • Rattus norvegicus (Norway rat)
  • Homo sapiens (Human)

    Protein

  • CD59 glycoprotein / Homo sapiens    P13987
  • Aspartyl/asparaginyl beta-hydroxylase / Homo sapiens    Q12797
  • Prostaglandin F2 receptor negative regulator / Homo sapiens    Q9P2B2
  • Fibronectin / Homo sapiens    P02751
  • NADPH--cytochrome P450 reductase / Homo sapiens    P16435
  • Phosphatidylinositol-glycan-specific phospholipase D / Homo sapiens    P80108
  • Biglycan / Homo sapiens    P21810
  • Olfactomedin-like protein 3 / Homo sapiens    Q9NRN5
  • Clusterin / Homo sapiens    P10909
  • Methylated-DNA--protein-cysteine methyltransferase / Homo sapiens    P16455
  • 2-hydroxyacylsphingosine 1-beta-galactosyltransferase / Homo sapiens    Q16880
  • Asporin / Homo sapiens    Q9BXN1
  • Prostaglandin-h2 d-isomerase / Homo sapiens    P41222
  • Translocon-associated protein subunit alpha / Homo sapiens    P43307
  • Lumican / Homo sapiens    P51884
  • Prothrombin / Homo sapiens    P00734
  • Type 2 lactosamine alpha-2,3-sialyltransferase / Homo sapiens    Q9Y274
  • Mannan-binding lectin serine protease 1 / Homo sapiens    P48740
  • Lysosome-associated membrane glycoprotein 1 / Homo sapiens    P11279
  • Heparin cofactor 2 / Homo sapiens    P05546
  • Interleukin-1 receptor accessory protein / Homo sapiens    Q9NPH3
  • Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 / Homo sapiens    P04844
  • Serum paraoxonase/arylesterase 1 / Homo sapiens    P27169
  • Dipeptidyl peptidase 1 / Homo sapiens    P53634
  • Prolow-density lipoprotein receptor-related protein 1 / Homo sapiens    Q07954
  • Vitronectin / Homo sapiens    P04004
  • Inter-alpha-trypsin inhibitor heavy chain h4 / Homo sapiens    Q14624
  • Secretogranin-3 / Homo sapiens    Q8WXD2
  • Decorin / Homo sapiens    P07585
  • Fibromodulin / Homo sapiens    Q06828
  • Coagulation factor XIII B chain / Homo sapiens    P05160
  • Prostate-specific antigen (psa-1) / Homo sapiens    P07288
  • Protein AMBP / Homo sapiens    P02760
  • Complement factor H-related protein 5 / Homo sapiens    Q9BXR6
  • Neuroligin 1 / Rattus norvegicus    Q62765
  • Leucine-rich alpha-2-glycoprotein / Homo sapiens    P02750

    Source

  • HEK293-EBNA (CVCL_6974)   Kidney (UBERON_0002113)  
  • HEK293 (CVCL_0045)   Kidney (UBERON_0002113)  
  • Mammary Gland (UBERON_0001911)  
  • Urine (UBERON_0001088)  

    Reported structure

  • N-Linked / Undefined core / HexNAc(?1-?)Man(a1-?)[HexNAc(?1-?)[HexNAc (?1-?)]Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(?1-?)]GlcNAc+"+ (2 x Hex) + HexNAc + NeuAc"
  • N-Linked / Complex / Structure 2458
  • N-Linked / Complex / Structure 1812

    Composition

  • Hex:5 HexNAc:6 dHex:1 NeuAc:1 (avg mass : 2485.2982 )

    Disease

  • Prostate cancer (DOID:10283)
  • Cancer, breast (DOID:1612)

    Reported glycosite

  • Type 2 lactosamine alpha-2,3-sialyltransferase / Homo sapiens :
    •        Asn-308
  • Coagulation factor XIII B chain / Homo sapiens :
    •        Asn-545
  • Lumican / Homo sapiens :
    •        Asn-88
    •        Asn-127
  • Complement factor H-related protein 5 / Homo sapiens :
    •        Asn-126
  • 2-hydroxyacylsphingosine 1-beta-galactosyltransferase / Homo sapiens :
    •        Asn-333
  • Fibronectin / Homo sapiens :
    •        Asn-430
    •        Asn-528
    •        Asn-542
  • Translocon-associated protein subunit alpha / Homo sapiens :
    •        Asn-136
  • Prothrombin / Homo sapiens :
    •        Asn-416
  • Fibromodulin / Homo sapiens :
    •        Asn-201
    •        Asn-291
  • NADPH--cytochrome P450 reductase / Homo sapiens :
    •        Asn-175
  • Heparin cofactor 2 / Homo sapiens :
    •        Asn-188
  • Protein AMBP / Homo sapiens :
    •        Asn-250
  • Decorin / Homo sapiens :
    •        Asn-262
  • Prostaglandin F2 receptor negative regulator / Homo sapiens :
    •        Asn-286
  • Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 / Homo sapiens :
    •        Asn-106
  • Neuroligin 1 / Rattus norvegicus :
    •        Undefined site
  • Mannan-binding lectin serine protease 1 / Homo sapiens :
    •        Asn-178
  • Lysosome-associated membrane glycoprotein 1 / Homo sapiens :
    •        Asn-84
  • Vitronectin / Homo sapiens :
    •        Asn-169
  • Leucine-rich alpha-2-glycoprotein / Homo sapiens :
    •        Asn-325
  • Prolow-density lipoprotein receptor-related protein 1 / Homo sapiens :
    •        Asn-3839
  • Dipeptidyl peptidase 1 / Homo sapiens :
    •        Asn-119
  • Methylated-DNA--protein-cysteine methyltransferase / Homo sapiens :
    •        Asn-157
  • Secretogranin-3 / Homo sapiens :
    •        Asn-346
  • Aspartyl/asparaginyl beta-hydroxylase / Homo sapiens :
    •        Asn-452
  • Asporin / Homo sapiens :
    •        Asn-282
  • Phosphatidylinositol-glycan-specific phospholipase D / Homo sapiens :
    •        Asn-321
  • Prostate-specific antigen (psa-1) / Homo sapiens :
    •        Asn-69
  • Serum paraoxonase/arylesterase 1 / Homo sapiens :
    •        Asn-253
  • Prostaglandin-h2 d-isomerase / Homo sapiens :
    •        Asn-78
  • CD59 glycoprotein / Homo sapiens :
    •        Asn-43
  • Interleukin-1 receptor accessory protein / Homo sapiens :
    •        Asn-118
  • Inter-alpha-trypsin inhibitor heavy chain h4 / Homo sapiens :
    •        Asn-517
    •        Asn-577
  • Biglycan / Homo sapiens :
    •        Asn-270
    •        Asn-311
  • Olfactomedin-like protein 3 / Homo sapiens :
    •        Asn-248
  • Clusterin / Homo sapiens :
    •        Asn-86
    •        Asn-103
    •        Asn-354
    •        Asn-374

    Mass spectrometry validated peptide

  • TAVNCSSDFDACLITK (16aa)
    •    P13987    Asn-43
  • SVVAPATDGGLNLTSTFLRK (20aa)
    •    P41222    Asn-78
  • SVVAPATDGGLNLTSTFLR (19aa)
    •    P41222    Asn-78
  • SSCGKENTSDPSIVIAFGR (19aa)
    •    P11279    Asn-84
  • KEDALNETR (9aa)
    •    P10909    Asn-86
  • AFENVTDLQWLILDHNLLENSK (22aa)
    •    P51884    Asn-88
  • ELPGVCNETMMALWEECKPCLK (22aa)
    •    P10909    Asn-103
  • ISISNETK (8aa)
    •    P04844    Asn-106
  • NTTYCSK (7aa)
    •    Q9NPH3    Asn-118
  • VTTYCNETMTGWVHDVIGR (19aa)
    •    P53634    Asn-119
  • LHINHNNLTESVGPLPK (17aa)
    •    P51884    Asn-127
  • KNISCVER (8aa)
    •    Q9BXR6    Asn-126
  • KLHINHNNLTESVGPLPK (18aa)
    •    P51884    Asn-127
  • FYIQNFTALPLNTVVPPQR (19aa)
    •    P43307    Asn-136
  • NYSGGLAVK (9aa)
    •    P16455    Asn-157
  • NGSLFAFR (8aa)
    •    P04004    Asn-169
  • VFGLGNK (7aa)
    •    P16435    Asn-175
  • FGYILHTDNR (10aa)
    •    P48740    Asn-178
  • DFVNASSK (8aa)
    •    P05546    Asn-188
  • VPNNAIEGIENITAIYIQHNEIQEVGSSMR (30aa)
    •    Q06828    Asn-201
  • FHLANR (6aa)
    •    Q9NRN5    Asn-248
  • YFYNGTSMACETFQYGGCMGNGNNFVTEK (29aa)
    •    P02760    Asn-250
  • HANWTITPIK (10aa)
    •    P27169    Asn-253
  • IGISFNSISAVDNGSIANTPHIR (23aa)
    •    P07585    Asn-262
  • MIENGSISFIPTIR (14aa)
    •    P21810    Asn-270
  • ITDIENGSIANIPR (14aa)
    •    Q9BXN1    Asn-282
  • NVSVAEGK (8aa)
    •    Q9P2B2    Asn-286
  • LSHNSLTNNGLASNTFNSSSLLELDLSYNQLQK (33aa)
    •    Q06828    Asn-291
  • NVTAEQLFLK (10aa)
    •    Q9Y274    Asn-308
  • IIQVVYIHSNNITK (14aa)
    •    P21810    Asn-311
  • NINYTER (7aa)
    •    P80108    Asn-321
  • MFSQNDTR (8aa)
    •    P02750    Asn-325
  • NLGNNTK (7aa)
    •    Q16880    Asn-333
  • NATDNISK (8aa)
    •    Q8WXD2    Asn-346
  • MINTSSIIEQINEQFNWVSR (20aa)
    •    P10909    Asn-354
  • IANITQGEDQYYIR (14aa)
    •    P10909    Asn-374
  • NFTENDLLVR (10aa)
    •    P00734    Asn-416
  • NYTDCTSEGR (10aa)
    •    P02751    Asn-430
  • QLFPNDTSLK (10aa)
    •    Q12797    Asn-452
  • DQCIVDDITYNVNDTFHK (18aa)
    •    P02751    Asn-528
  • HEEGHMLNCTCFGQGR (16aa)
    •    P02751    Asn-542
  • RHEEGHMINCTCFGQGR (17aa)
    •    P02751    Asn-542
  • TYENGSSVEYR (11aa)
    •    P05160    Asn-545
  • FGTCSQICNNTK (12aa)
    •    Q07954    Asn-3839
  • No image
    • N-Linked / Complex (avg mass : 2485.2982 )
    • Site (2)

        Reported glycosite

      • Inter-alpha-trypsin inhibitor heavy chain h4 / Homo sapiens :
        •        Asn-517
        •        Asn-577
  • No image
    • N-Linked / Complex (avg mass : 2485.2982 )
    • Site (1)

        Reported glycosite

      • Prostate-specific antigen (psa-1) / Homo sapiens :
        •        Asn-69
  • No image
    • N-Linked / Undefined core (avg mass : 2485.2982 )
    • Site (1)

        Reported glycosite

      • Neuroligin 1 / Rattus norvegicus :
        •        Undefined site
  • 5 x 6 x 1 x 1 x
    • Hex:5 HexNAc:6 dHex:1 NeuAc:1 (avg mass : 2485.2982 )
    • Site (41) Suggested Structure (2)

        Suggested structure

      • N-Linked / Complex / Structure 2458
      • N-Linked / Undefined core / HexNAc(?1-?)Man(a1-?)[HexNAc(?1-?)[HexNAc (?1-?)]Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(?1-?)]GlcNAc+"+ (2 x Hex) + HexNAc + NeuAc"

        Reported glycosite

      • Type 2 lactosamine alpha-2,3-sialyltransferase / Homo sapiens :
        •        Asn-308
      • Coagulation factor XIII B chain / Homo sapiens :
        •        Asn-545
      • Lumican / Homo sapiens :
        •        Asn-88
        •        Asn-127
      • Complement factor H-related protein 5 / Homo sapiens :
        •        Asn-126
      • 2-hydroxyacylsphingosine 1-beta-galactosyltransferase / Homo sapiens :
        •        Asn-333
      • Fibronectin / Homo sapiens :
        •        Asn-430
        •        Asn-528
        •        Asn-542
      • Translocon-associated protein subunit alpha / Homo sapiens :
        •        Asn-136
      • Prothrombin / Homo sapiens :
        •        Asn-416
      • Fibromodulin / Homo sapiens :
        •        Asn-201
        •        Asn-291
      • NADPH--cytochrome P450 reductase / Homo sapiens :
        •        Asn-175
      • Heparin cofactor 2 / Homo sapiens :
        •        Asn-188
      • Protein AMBP / Homo sapiens :
        •        Asn-250
      • Decorin / Homo sapiens :
        •        Asn-262
      • Prostaglandin F2 receptor negative regulator / Homo sapiens :
        •        Asn-286
      • Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 / Homo sapiens :
        •        Asn-106
      • Mannan-binding lectin serine protease 1 / Homo sapiens :
        •        Asn-178
      • Lysosome-associated membrane glycoprotein 1 / Homo sapiens :
        •        Asn-84
      • Vitronectin / Homo sapiens :
        •        Asn-169
      • Leucine-rich alpha-2-glycoprotein / Homo sapiens :
        •        Asn-325
      • Prolow-density lipoprotein receptor-related protein 1 / Homo sapiens :
        •        Asn-3839
      • Dipeptidyl peptidase 1 / Homo sapiens :
        •        Asn-119
      • Methylated-DNA--protein-cysteine methyltransferase / Homo sapiens :
        •        Asn-157
      • Secretogranin-3 / Homo sapiens :
        •        Asn-346
      • Aspartyl/asparaginyl beta-hydroxylase / Homo sapiens :
        •        Asn-452
      • Asporin / Homo sapiens :
        •        Asn-282
      • Phosphatidylinositol-glycan-specific phospholipase D / Homo sapiens :
        •        Asn-321
      • Serum paraoxonase/arylesterase 1 / Homo sapiens :
        •        Asn-253
      • Prostaglandin-h2 d-isomerase / Homo sapiens :
        •        Asn-78
      • CD59 glycoprotein / Homo sapiens :
        •        Asn-43
      • Interleukin-1 receptor accessory protein / Homo sapiens :
        •        Asn-118
      • Biglycan / Homo sapiens :
        •        Asn-270
        •        Asn-311
      • Olfactomedin-like protein 3 / Homo sapiens :
        •        Asn-248
      • Clusterin / Homo sapiens :
        •        Asn-86
        •        Asn-103
        •        Asn-354
        •        Asn-374

Composition mass

Average mass : 2485.2982 Da

Monoisotopic mass : 2483.9043 Da

References (5)

Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides (2018)
Yingwei Hu, Punit Shah, David J. Clark, Minghui Ao, Hui Zhang
Pubmed : 29741879   DOI : 10.1021/acs.analchem.8b01137
Status : Unreviewed

Distinct urinary glycoprotein signatures in prostate cancer patients (2018)
Rebeca Kawahara, Fabio Ortega, Livia Rosa-Fernandes, Vanessa Guimarães, Daniel Quina, Willian Nahas, Veit Schwämmle, Miguel Srougi, Katia R.M. Leite, Morten Thaysen-Andersen, Martin R. Larsen and Giuseppe Palmisano
Pubmed : 30237853   DOI : 10.18632/oncotarget.26005
Status : Unreviewed

Glycoproteomics: Identifying the Glycosylation of Prostate Specific Antigen at Normal and High Isoelectric Points by LC-MS/MS (2014)
Song E, Mayampurath A, Yu CY, Tang H, Mechref Y
Pubmed : 25327667   DOI : 10.1021/pr500575r
Status : Reviewed

Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4 (2014)
Chandler KB, Brnakova Z, Sanda M, Wang S, Stalnaker SH, Bridger R, Zhao P, Wells L, Edwards NJ, Goldman R.
Pubmed : 24884609   DOI : 10.1021/pr500394z
Status : Reviewed

Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry. (2004)
Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P
Pubmed : 14769026   DOI : 10.1021/bi035278t
Status : Reviewed

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